Morpheus: This is a war and we are soldiers. Death can come for us at any time, in any place.
[Scene switch to the Vigilant under attack]
Morpheus: . Now consider the alternative. What if I am right? What if the prophecy is true? What if tomorrow the war could be over? Isn't that worth fighting for? Isn't that worth dying for?

Agent Smith: I killed you, Mr. Anderson. I watched you die... with a certain satisfaction, I might add. Then something happened. something that I knew was impossible, but it happened anyway. You destroyed me, Mr. Anderson. After that, I understood the rules, I knew what I was supposed to do, but I didn't. I couldn't. I was compelled to stay, compelled to disobey. And now, here I stand because of you, Mr. Anderson. Because of you, I'm no longer an Agent of this system. Because of you, I've changed. I'm unplugged. A new man, so to speak. Like you, apparently, free.
Neo: Congratulations.
Agent Smith: Thank you.

Commander Lock: Dammit, Morpheus. Not everyone believes what you believe.
Morpheus: My beliefs do not require them to.

The Architect: The function of the One is now to return to the source, allowing a temporary dissemination of the code you carry, reinserting the prime program. After which you will be required to select from the matrix 23 individuals, 16 female, 7 male, to rebuild Zion. Failure to comply with this process will result in a cataclysmic system crash killing everyone connected to the matrix, which coupled with the extermination of Zion will ultimately result in the extinction of the entire human race.
Neo: You won't let it happen, you can't. You need human beings to survive.

Niobe: I remember. I remember when you used to dance. I remember you were... pretty good.
Morpheus: There are some things in this world, Captain Niobe, that will never change.
Commander Lock: Niobe.
Morpheus: Some things do change.

You look surprised to see me, again, Mr. Anderson. That's the difference between us. I've been *expecting* you.

Agent Smith

The best thing about being me... There are so many "me"s.
[All the doors open, lots of Smith clones step out]

Agent Smith

Agent Smith: I want everything.
Morpheus: Would that include a bullet from this gun?

Trinity: You always told me to stay off the freeway.
Morpheus: Yes, that's true.
Trinity: You said it was suicide.
Morpheus: Then let us hope that I was wrong.

[after first meeting with The Merovingian]
Neo: Well, that didn't go so well.
Morpheus: Are you Certain the Oracle didn't say anything else?
Neo: Yes.
Trinity: Maybe we did something wrong.
Neo: Or didn't do something.
Morpheus: No, what happened, happened and couldn't have happened any other way.
Neo: How do you know?
Morpheus: We are still alive.

Goddammit woman, you will be the end of me.

Merovingian

Commander Lock: I believe I'm going to need every ship we have if we're going to survive this attack.
Councillor Harmann: I understand that, Commander.
Commander Lock: Then why did you allow the Nebuchadnezzer to leave?
Councillor Harmann: Because *I* believe our survival depends on more than how many *ships* we have.

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The Matrix Reloaded Quotes

Mark my words boy, Mark them well, I have survived your predecessors and I will survive you.

Merovingian

The Architect: As I was saying, she stumbled upon a solution whereby nearly ninety-nine percent of the test subjects accepted the program provided they were given a choice - even if they were only aware of it at a near-unconscious level. While this solution worked, it was fundamentally flawed, creating the otherwise contradictory systemic anomaly, that, if left unchecked, might threaten the system itself. Ergo, those who refused the program, while a minority, would constitute an escalating probability of disaster.
Neo: This is about Zion.